mirror of https://github.com/CrimsonTome/tldr.git
21 lines
546 B
Markdown
21 lines
546 B
Markdown
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# treetime
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> TreeTime provides routines for ancestral sequence reconstruction and inference of molecular-clock phylogenies.
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> More information: <https://treetime.readthedocs.io/en/latest/tutorials.html>.
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- Infer ancestral sequences maximizing the joint or marginal likelihood:
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`treetime ancestral`
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- Analyze patterns of recurrent mutations aka homoplasies:
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`treetime homoplasy`
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- Estimate molecular clock parameters and reroot the tree:
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`treetime clock`
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- Map discrete character such as host or country to the tree:
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`treetime mugration`
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