From e0a5a7e5880034b46ac988fa27a9eca1102ff865 Mon Sep 17 00:00:00 2001
From: vatana7 <61142258+vatana7@users.noreply.github.com>
Date: Mon, 24 Oct 2022 14:58:33 +0700
Subject: [PATCH] treetime: add page (#9162)

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 pages/linux/treetime.md | 20 ++++++++++++++++++++
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 create mode 100644 pages/linux/treetime.md

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+# treetime
+
+> TreeTime provides routines for ancestral sequence reconstruction and inference of molecular-clock phylogenies.
+> More information: <https://treetime.readthedocs.io/en/latest/tutorials.html>.
+
+- Infer ancestral sequences maximizing the joint or marginal likelihood:
+
+`treetime ancestral`
+
+- Analyze patterns of recurrent mutations aka homoplasies:
+
+`treetime homoplasy`
+
+- Estimate molecular clock parameters and reroot the tree:
+
+`treetime clock`
+
+- Map discrete character such as host or country to the tree:
+
+`treetime mugration`